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MSQT - Multiple SNP Query Tool

Welcome to MSQT!

MSQT is a SNP Query Tool. It was developed to make available polymorphism information readily accessible and to assist researchers in selecting distinct sequence changes and developing SNP detection assays.


We provide several tools for SNP mining and analysis.

  • MSQT/SBE: SNPs Between Ecotypes; finds distinct SNPs between two sets of ecotypes
  • MSQT/ADF: Assay Development Formatter; annotates polymorphisms
  • MSQT/E: Expert mode; direct interface to the databases
  • MSQT/SNIPED!: query interface to a precompiled SNP database; works via the expert mode